It turned out I didn’t have the time and strength to blog every day at the NGS Bioinformatics Intro course, so here comes a wrap up with some random notes and tidbits from the last days, including any concluding remarks!
These days we started working on a more realistic NGS pipeline, on analysing re-sequencing samples (slides , tutorial ).
First some outcome from this tutorial What do I mean with “outcome”?
Today was the second day of the introductory course in NGS bioinformatics that I’m taking as part of my PhD studies.
For me it started with a substantial oversleep, probably due to a combination of an annoying cold and the ~2 hour commute from south Stockholm to Uppsala and BMC . Thus I missed some really interesting material (and tutorial ) on file types in NGS analysis, but will make sure to go through that in my free time during the week.
Just finished day 1 of the introductory course on Bioinformatics for Next generation sequencing data at Scilifelab Uppsala. Attaching a photo from one of the hands-on tutorial sessions, with the tutorial leaders, standing to the right.
Today’s content was mostly introductions to the linux commandline in general, and the UPPMAX HPC environment in particular, an area I’m already very familiar with, after two years as a sysadmin at UPPMAX. Thus, today I mostly got to help out the other students a bit.